PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002447-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 310aa    MW: 34844.4 Da    PI: 9.0092
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002447-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.47.4e-2662164190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgk 75 
                            +fY+++A +vGFs  +++s++s+ +g++++++fvC+++g + e+++              +++ r +r+ ++t+Cka+++vk+++dg+
  SMil_00002447-RA_Salv  62 NFYKAHALSVGFSAIIKASRRSRISGKFIDAKFVCTRYGAKPETSSLaesseltrnahvkKKRGRINRSWSKTDCKACMHVKRRQDGR 149
                            6**************************************99998877899*******987788888********************** PP

                   FAR1  76 wevtkleleHnHela 90 
                            w v+++++eHnH+l+
  SMil_00002447-RA_Salv 150 WIVSSFVKEHNHDLV 164
                            ************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-2462164IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.151226262IPR007527Zinc finger, SWIM-type
PfamPF044342.9E-8226259IPR007527Zinc finger, SWIM-type
SMARTSM005754.6E-8237264IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MRLDPPHPST GNRNDSAGVK SCNGGDKPAD SAPIIIDCET SSRKSSEPHE SKEFESKEEA  60
FNFYKAHALS VGFSAIIKAS RRSRISGKFI DAKFVCTRYG AKPETSSLAE SSELTRNAHV  120
KKKRGRINRS WSKTDCKACM HVKRRQDGRW IVSSFVKEHN HDLVIDSSGL RNVCSSNSAQ  180
IYTHAVFKKF QVEVLGVVAC HPKLEGRDDD ATNTFKVHDF EENQVYLVTW NEDTADASCA  240
CRMFEYNGFL CRHVMIVLQI CGVNTIPTKY ILRRWTKNVK NGEGARQVDG IESRNERSVI  300
YTSVLVNLAM
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096824.18e-55PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1
RefseqXP_011096826.17e-55PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
RefseqXP_011096827.17e-55PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X2
SwissprotQ5UBY24e-43FRS1_ARATH; Protein FAR1-RELATED SEQUENCE 1
STRINGVIT_01s0011g01470.t013e-52(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.14e-39FAR1 family protein